Virtual Reality Application in Data Visualization and Analysis

This thesis is aimed for finding a solution for non-gaming application of Virtual Reality technology in data visualization and analysis. Starting by reconstructing the concept of Virtual Reality, the paper then describes the principles, concepts and techniques of designing a Virtual Reality application. In the last part of the thesis, a detailed description of how a prototype implemented is presented to provide a preview of how data visualization and analysis and Virtual Reality technology can be combined together in order to enable users to perceive and comprehend data in a possibly better way

EpiAlign: an alignment-based bioinformatic tool for comparing chromatin state sequences.

The availability of genome-wide epigenomic datasets enables in-depth studies of epigenetic modifications and their relationships with chromatin structures and gene expression. Various alignment tools have been developed to align nucleotide or protein sequences in order to identify structurally similar regions. However, there are currently no alignment methods specifically designed for comparing multi-track epigenomic signals and detecting common patterns that may explain functional or evolutionary similarities. We propose a new local alignment algorithm, EpiAlign, designed to compare chromatin state sequences learned from multi-track epigenomic signals and to identify locally aligned chromatin regions. EpiAlign is a dynamic programming algorithm that novelly incorporates varying lengths and frequencies of chromatin states. We demonstrate the efficacy of EpiAlign through extensive simulations and studies on the real data from the NIH Roadmap Epigenomics project. EpiAlign is able to extract recurrent chromatin state patterns along a single epigenome, and many of these patterns carry cell-type-specific characteristics. EpiAlign can also detect common chromatin state patterns across multiple epigenomes, and it will serve as a useful tool to group and distinguish epigenomic samples based on genome-wide or local chromatin state patterns

A Robust Method for Speech Emotion Recognition Based on Infinite Student’s t

Speech emotion classification method, proposed in this paper, is based on Student’s t-mixture model with infinite component number (iSMM) and can directly conduct effective recognition for various kinds of speech emotion samples. Compared with the traditional GMM (Gaussian mixture model), speech emotion model based on Student’s t-mixture can effectively handle speech sample outliers that exist in the emotion feature space. Moreover, t-mixture model could keep robust to atypical emotion test data. In allusion to the high data complexity caused by high-dimensional space and the problem of insufficient training samples, a global latent space is joined to emotion model. Such an approach makes the number of components divided infinite and forms an iSMM emotion model, which can automatically determine the best number of components with lower complexity to complete various kinds of emotion characteristics data classification. Conducted over one spontaneous (FAU Aibo Emotion Corpus) and two acting (DES and EMO-DB) universal speech emotion databases which have high-dimensional feature samples and diversiform data distributions, the iSMM maintains better recognition performance than the comparisons. Thus, the effectiveness and generalization to the high-dimensional data and the outliers are verified. Hereby, the iSMM emotion model is verified as a robust method with the validity and generalization to outliers and high-dimensional emotion characters

Anderson Localization from Berry-Curvature Interchange in Quantum Anomalous Hall System

We theoretically investigate the localization mechanism of the quantum anomalous Hall effect (QAHE) in the presence of spin-flip disorders. We show that the QAHE keeps quantized at weak disorders, then enters a Berry-curvature mediated metallic phase at moderate disorders, and finally goes into the Anderson insulating phase at strong disorders. From the phase diagram, we find that at the charge neutrality point although the QAHE is most robust against disorders, the corresponding metallic phase is much easier to be localized into the Anderson insulating phase due to the \textit{interchange} of Berry curvatures carried respectively by the conduction and valence bands. At the end, we provide a phenomenological picture related to the topological charges to better understand the underlying physical origin of the QAHE Anderson localization.Comment: 6 pages, 4 figure